Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
BLCA rs35912980 chr5:3458039 G/C 1.34E-5 402 17.4 19.35 4.37 KM Plot
BLCA rs35928407 chr5:3503392 G/C 9.1E-6 405 17.23 19.92 4.37 KM Plot
BLCA rs36041222 chr5:131592062 AC/A 5.96E-6 386 17.92 19.97 14.27 KM Plot
BLCA rs371709 chr5:131583240 A/G 4.49E-6 402 19.27 19.72 14.17 KM Plot
BLCA rs375988613 chr5:3510861 G/GAGCTCAGGGGGAAGAGCACG 9.1E-6 405 17.4 19.77 4.37 KM Plot
BLCA rs3763112 chr5:131586480 A/G 7.25E-6 399 21.27 17.67 15.23 KM Plot
BLCA rs3809333 chr13:25861770 G/A 5.88E-13 398 17.87 18.13 4.97 KM Plot
BLCA rs3809334 chr13:25861656 G/A 5.88E-13 398 17.87 18.13 4.97 KM Plot
BLCA rs3900945 chr5:131592870 T/C 2.74E-6 401 19.27 19.17 14.27 KM Plot
BLCA rs41290732 chr13:25836053 G/A 4.1E-8 404 17.87 17.53 5.13 KM Plot
BLCA rs4330455 chr5:131586349 T/C 3.57E-6 401 21.32 17.67 14.85 KM Plot
BLCA rs4361510 chr5:131599647 C/T 1.12E-6 400 18.62 19.13 14.37 KM Plot
BLCA rs4535443 chr5:131572561 A/G 1.61E-6 396 19.27 19.67 14.13 KM Plot
BLCA rs4654415 chr1:4238082 A/G 1.52E-6 397 12.27 19.47 16.85 KM Plot
BLCA rs4654416 chr1:4238104 T/C 1.52E-6 397 12.27 19.47 16.85 KM Plot